deepnog: Deep learning based protein orthologous group assignment. Map your genomic or metagenomic protein sequences to eggNOG5.

– Hubness analysis and reduction (e.g. mutual proximity, local scaling)
– approximate nearest neighbor search (e.g. LSH, HNSW)
– fully scikit-learn compatible
– successor to the hub-toolbox
– Available from PyPI: $ pip install scikit-hubness

Hub-Toolbox for Python3: Hubness analysis and reduction for high-dimensional data

PICA: Microbial phenotype prediction (see also its successor phenotrex)

Contributor to scientific Python packages (SciPy, scikit-learn)